This dataset includes ancient genotype data as described in Nikitin, Stadler, Kotova et al. (2019) in PACKEDANCESTRYMAP format.

You may convert the data to other formats using the "convertf" utility of EIGENSOFT (https://data.broadinstitute.org/alkesgroup/EIGENSOFT/).

A number of different analyses can be performed using the appliations in ADMIXTOOLS (https://github.com/DReichLab/AdmixTools).

The dataset includes three files: *.geno (genotype data), *.ind (individual data), and *.snp (SNP data). Together they contain genotype information for the three ancient individuals from Brunn 2 (Austria).  

BAM files:

You may find sequence read data for the individuals reported here in the European Nucleotide Archive (https://www.ebi.ac.uk/ena/) under accession number PRJEB33001.

For questions and issues regarding this dataset, please contact Mark Lipson (mlipson[at]genetics.med.harvard.edu).

Paper reference:

A. Nikitin, P. Stadler, N. Kotova,  et al. "Interactions between earliest Linearbandkeramik farmers and central European hunter gatherers at the dawn of European Neolithization." Scientific Reports (2019). 
