This dataset includes ancient genotype data as described in Lazaridis et al. (2017) in PACKEDANCESTRYMAP format.
You may convert this data to other formats using the "convertf" utility of EIGENSOFT (https://data.broadinstitute.org/alkesgroup/EIGENSOFT/).
You may use ADMIXTUOOLS (https://github.com/DReichLab/AdmixTools) for different types of analysis over this data.
The dataset includes three files *.geno (genotype data), *.ind (individual data), *.snp (SNP data), 351 ancient individuals (including 19 newly reported), Chimp, and the human reference.

Auxiliary files:

HOIll.snp:  	1054671 SNPs used for analysis of ancient individuals alone (Methods)
HO.snp:      	591642 SNPs used for co-analysis of ancient and present-day individuals (Methods). 

BAM files:

You may find sequence read data on the 19 ancient individuals first reported here in the European Nucleotide Archive (https://www.ebi.ac.uk/ena/) under accession number PRJEB20914

For questions and issues regarding this dataset, please contact Iosif Lazaridis (lazaridis[at]genetics.med.harvard.edu)

I. Lazaridis et al. "Genetic origins of the Minoans and Mycenaeans". Nature (2017). DOI: 10.1038/nature23310
