This dataset includes ancient genotype data as described in Reitsema et al. (2022) in PACKEDANCESTRYMAP format.

You may convert the data to other formats using the "convertf" utility of EIGENSOFT (https://data.broadinstitute.org/alkesgroup/EIGENSOFT/).

A number of different analyses can be performed using the appliations in ADMIXTOOLS (https://github.com/DReichLab/AdmixTools).

The dataset includes three files: *.geno (genotype data), *.ind (individual data), and *.snp (SNP data). Together they contain genotype information for 54 ancient individuals from the sites Himera, Polizzello and Baucina - Monte Falcone on Sicily, Italy. 
BAM files:

You may find sequence read data for the individuals reported here in the European Nucleotide Archive (https://www.ebi.ac.uk/ena/) under accession number PRJEB55842.

Paper reference:

L.J. Reitsema et al. 2022 "The diverse genetic origins of a Classical period Greek army." PNAS (2022). Refer to Dataset S2 for a tabular overview of the samples containing information on context and bioinformatic processing.
