This dataset includes ancient genotype data as described in Lipson et al. (2020) in PACKEDANCESTRYMAP format.

You may convert the data to other formats using the "convertf" utility of EIGENSOFT (https://data.broadinstitute.org/alkesgroup/EIGENSOFT/).

A number of different analyses can be performed using the appliations in ADMIXTOOLS (https://github.com/DReichLab/AdmixTools).

The dataset includes three files: *.geno (genotype data), *.ind (individual data), and *.snp (SNP data). Together they contain genotype information for 12 ancient individuals from Vanuatu (11 newly reported here).  

BAM files:

You may find sequence read data for the individuals reported here in the European Nucleotide Archive (https://www.ebi.ac.uk/ena/) under accession number PRJEB40109.

For questions and issues regarding this dataset, please contact Mark Lipson (mlipson[at]hms.harvard.edu).

Paper reference:

M. Lipson  et al. "Three phases of ancient migration shaped the ancestry of human populations in Vanuatu." Current Biology (2020). 
