Datasets

2024

Genotypes of ancient individuals analyzed in Sirak et al. Nat Ecol Evol 2024


2023

Genotypes of modern individuals analyzed in Olalde et al. Cell 2023

Genotypes of ancient individuals analyzed in Harney et al. Science 2023


2022

Genotypes of modern individuals analyzed in Changmai et al. bioRxiv 2022

Genotypes of ancient / modern individuals analyzed in Reitsema et al. PNAS 2022

Genotypes of ancient individuals analyzed in Lazaridis et al. Science 2022

Genotypes of ancient individuals analyzed in Tiesler et al. Antiquity 2022

Genotypes of ancient individuals analyzed in Liu et al. Science 2022

Genotypes of modern individuals analyzed in Liu et al. Science 2022

Genotypes of ancient individuals analyzed in Harney et al. bioRxiv 2022

Genotypes of ancient individuals analyzed in Waldman et al. Cell 2022

Genotypes of ancient individuals analyzed in Kennett et al. Nature Communications 2022 

Genotypes of ancient individuals analyzed in Lipson et al. Nature 2022 

Whole-genome shotgun data for Lipson et al. Nature 2022

Genotypes of modern individuals analyzed in Changmai et al. PLoS Genetics 2022 


2021

Genotypes of ancient individuals analyzed in Sirak et al. Nature Communications 2021

Genotypes of ancient individuals analyzed in Patterson et al. Nature 2021

Genotypes of ancient individuals analyzed in Fowler et al. Nature 2021

Genotypes of phased ancient Afanasievo family with newly reported whole genome sequences from Wohns et al. bioRxiv 2021

Genotypes of ancient individuals analyzed in Novak et al. PLoS One 2021

Genotypes of ancient individuals analyzed in Harney et al. Genome Research 2021


2020

Genotypes of ancient individuals analyzed in Lipson et al. Current Biology 2020

Genotypes of ancient individuals analyzed in Nakatsuka et al. Nature Communications 2020 (Note: The version of the dataset we posted when this paper was published (included here for reference) had some errors and was not the one we used in our published analysis; the main link now goes to the correct dataset.)  

Genotypes of ancient individuals analyzed in Fernandes, Sirak et al. Nature 2020

Genotypes of ancient individuals analyzed in Agranat-Tamir et al. Cell 2020

Genotypes of ancient individuals analyzed in Nakatsuka et al. Cell 2020

Genotypes of 166 ancient and 383 modern East Asians reported in Wang et al. bioRxiv 2020

Genotypes of ancient individuals analyzed in Sirak, Fernandes et al. Genome Research 2020

Genotypes of ancient individuals analyzed in Fernandes et al. Nature Ecology and Evolution 2020

Genotypes of ancient individuals, whole-genome sequences of ancient individuals, and genotypes of present-day individuals analyzed in Lipson et al. Nature 2020


2019

Genotypes of ancient individuals analyzed in Nikitin et al. Scientific Reports 2019

List of SNPs discovered as polymorphic in Simons Genome Diversity Project, combining the 300 individuals sequenced in Mallick et al. Nature 2016 with the 45 additionally reported sequences in Fan et al. Genome Biology 2019

Genotypes of ancient individuals analyzed in Narasimhan et al. Science 2019

Genotypes of ancient individuals analyzed in Shinde et al. Cell 2019

Genotypes of ancient individuals analyzed in Harney et al. Nature Communications 2019

Genotypes of ancient individuals analyzed in Flegontov et al. Nature 2019

Genotypes of ancient individuals analyzed in Prendergast et al. Science 2019

Genotypes of published ancient DNA data (Note: We intend to continue to update this dataset over time and welcome suggestions for improvements.) 

Genotypes of ancient individuals analyzed in Olalde et al. Science 2019


2018

Genotypes of ancient individuals analyzed in Posth, Nakatsuka et al. Cell 2018 (Note: The version of the dataset we posted when this paper was published (included here for reference) had some errors and was not the one we used in our published analysis; the main link now goes to the correct dataset.)  

Genotypes of ancient individuals analyzed in Harney et al. Nature Communications 2018 

Genotypes of ancient individuals and present-day individuals analyzed in Lipson et al. Science 2018

Genotypes of newly reported ancient individuals analyzed in Narasimhan, Patterson et al. bioRxiv 2018

Reprocessed elephantid genomes analyzed in Palkopoulou et al. PNAS 2018

Genotypes of ancient individuals analyzed in Olalde et al. Nature 2018 

Genotypes of ancient individuals analyzed in Mathieson et al. Nature 2018

Genotypes of ancient individuals analyzed in Lipson et al. Current Biology 2018 


2017

Genotypes of ancient individuals analyzed in Lipson et al. Nature 2017

Genotypes of ancient individuals analyzed in van den Brink ECM et al. Levant 2017

Datasets of ancient Africans described in Skoglund et al. Cell 2017

Genotypes of ancient individuals analyzed in Lazaridis et al. Nature 2017

Genotypes of Iron Age nomads analyzed in Unterländer et al. Nature Communications 2017


2016

Genotypes of individuals from St. Mary's City Lead Coffin burials analyzed in Reich et al. 2016

Genotypes of ancient individuals and fully public Affymetrix Human Origins present-day individuals analyzed in Skoglund et al. Nature 2016

Genotypes of ancient individuals and fully public Affymetrix Human Origins present-day individuals analyzed in Lazaridis et al. Nature 2016

Simons Genome Diversity Project - Complete genomes from more than a hundred diverse populations analyzed in Mallick et al. Nature 2016

Genotypes of individuals analyzed in Fu et al. Nature 2016


2015

Genotypes of 230 ancient individuals analyzed in Mathieson et al. Nature 2015

Fully public genotype dataset (354,212 SNPs) described in Haak et al. Nature 2015


2014

Datasets from the Neanderthal introgression map published in Sankararaman et al. Nature 2014

Affymetrix Human Origins fully public dataset described in Lazaridis et al. Nature 2014


2012

Affymetrix Human Origins Curated dataset described in Patterson et al. Genetics 2012


2011

Affymetrix Human Origins dataset (Supplement 10) posted to HGDP on August 16 2011

African American Recombination Map described in Hinch et al Nature 2011

African American admixture mapping panels described in Tandon et al. 2011


2009

Cleanly ascertained X vs. autosomes data sets used in Keinan et al. Nature Genetics 2009

DNA sequence alignments and data used in Mallick et al. Genome Research 2009


2008

Panel of 300 European American AIMS described in Price et al. PLoS Genetics 2008

DNA sequence alignments used in Caswell et al. PLoS Genetics 2008


2007

Latino admixture mapping panel of 1,649 markers described in Price et al. AJHG 2007

Cleanly ascertained SNP datasets used in Keinan et al. Nature Genetics 2007


2006

DNA sequence alignments used in Patterson et al. Nature 2006